Great question! I used to think it was strange when our worship team took communion twice. But now I'm inclined to think it's a good thing. The Bible's most thorough discussion of the church's observance of the supper is in 1 Cor. 11, and that passage is largely about church unity and how the meal means eating and drinking together. Based on that, I would say that since you are participating in the worship service (assuming you see your role as a worship participant, not a mere performer) it's probably good to participate in communion whenever the congregation does.
On a related note, the Bible doesn't seem to anticipate our current trend of having multiple services every Sunday for the sake of convenience. Perhaps if we took meeting together as one unified body more seriously, this issue wouldn't come up. I'm not necessarily against multiple services (I think we have freedom here to act wisely after considering many factors) but it's something to think about.
Jack K.
PCA, worshiping with some fine Baptists in Colorado
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